PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 471733
Common NameARALYDRAFT_471733
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 197aa    MW: 21393.8 Da    PI: 6.2799
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
471733genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19553153
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
            ++++GVr+++ +g+WvAeIr+p        +r++lg+f taeeAa+a+++a+  +
  471733  5 KKFRGVRQRH-WGSWVAEIRHP-----LlkRRIWLGTFETAEEAARAYDEAAVLM 53
            59*******9.**********8.....334*********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-33563No hitNo description
PfamPF008471.4E-12650IPR001471AP2/ERF domain
PROSITE profilePS5103222.155663IPR001471AP2/ERF domain
SMARTSM003801.9E-39669IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-21665IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.6E-33663IPR001471AP2/ERF domain
PRINTSPR003671.2E-10718IPR001471AP2/ERF domain
PRINTSPR003671.2E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT  60
NFPFNNNTGD TSEGKTDISS SSTISSSSSS SLSSILSAKL RKCCKSPSPS LTCLRLDTAS  120
SHIGVWQKRA GSKSDSSWVM TVELGAASSS QETTSKDSQD DLAPTTELEV GGRGEEGMDE  180
EEKVALQMIE ELLNTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18270170ATERF1
3gcc_A2e-18270170ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1179410.0AK117941.1 Arabidopsis thaliana At1g15360 mRNA for putative ethylene responsive element, complete cds, clone: RAFL19-13-G20.
GenBankAY3781010.0AY378101.1 Arabidopsis thaliana transcription factor wax inducer 1 (WIN1) mRNA, complete cds.
GenBankBT0052200.0BT005220.1 Arabidopsis thaliana At1g15360 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890099.11e-142hypothetical protein ARALYDRAFT_471733
SwissprotQ9XI331e-114WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLD7KCQ51e-142D7KCQ5_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.1__1687__AT1G15360.11e-142(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.17e-92ERF family protein